Gabrielle Allen

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Publications


Book Chapters

  1. Zhou Lei, Zhifeng Yun, and Gabrielle Allen, Grid Resource Allocation, in Grid Computing: Infrastructure, Service, and Applications, Ed: L. Wang, J. Wei and J. Chen, ISBN-10: 1420067664, CRC Press (2008).
  2. Erik Schnetter, Christian Ott, Gabrielle Allen, Peter Diener, Tom Goodale, Thomas Radke, Edward Seidel, John Shalf, Cactus Framework: Black Holes to Gamma Ray Bursts, to appear as a chapter in Petascale Computing: Algorithms and Applications, Ed. D. Bader, CRC Press LLC (2007). [Download]
  3. Gabrielle Allen and Ed Seidel, Collaborative Science: Astrophysics Requirements and Experiences, in The Grid: Blueprint for a New Computing Infrastructure (2nd Edition), Ed: Ian Foster and Carl Kesselmann, p. 201-213, (2004). [Link]
    (CCT Bibtex: CS_Allen03a)
  4. Michael Russell, Gabrielle Allen, Jarek Nabrzyski, Tom Goodale, and Ed Seidel, Applications Requirements for Resource Brokering in a Grid Environment, In Grid Resource Management: State of the Art and Future Trends (International Series in Operations Research and Management Science), Ed: J. Nabrzyski, J. Schopf and J. Waglarz, Kluwer Academic Publishers, Pages 25-40, (2004). [Link]
    (CCT Bibtex: CS_Russell03a)
  5. Gabrielle Allen, Tom Goodale, Michael Russell, Ed Seidel and John Shalf, Classifying and Enabling Grid Applications, In Grid Computing: Making the Global Infrastructure a Reality, Ed: F. Berman, G. Fox, A. J. G. Hey, John Wiley, Pages 601-614, (2003). [Link]

Journals

  1. X. Wang, D. Huang, I. Akturk, M. Balman, G. Allen and T. Kosar, Semantic Enabled Metadata Management in PetaShare. To appear in International Journal of Grid and Utility Computing (IJGUC), (2009).
  2. D. S. Katz, G. Allen, R. Cortez, C. Cruz-Neira, R. Gottumukkala, Z. D. Greenwood, L. Guice, S. Jha, R. Kolluru, T. Kosar, L. Leger, H. Liu, C. McMahon, J. Nabrzyski, B. Rodriguez-Milla, E. Seidel, G. Speyrer, M. Stubblefield, B. Voss, S. Whittenburg, Louisiana: A Model for Advancing Regional e-Research through Cyberinfrastructure, to appear in Philosophical Transactions of the Royal Society A, (2009)

  3. Gabrielle Allen, Philip Bogden, Gerald Creager, Chirag Dekate, Carola Jesch, Hartmut Kaiser, Jon MacLaren, Will Perrie, Gregory Stone, Xiongping Zhang, GIS and integrated coastal ocean forecasting, Concurrency and Computation: Practice and Experience, Volume 20 Issue 14, Pages 1637 - 1651, (2008).
  4. Zhou Lei, Gabrielle Allen, Promita Chakraborty, Dayong Huang, John Lewis, Xin Li, Christopher D. White, A Grid-enabled problem-solving environment for advanced reservoir uncertainty analysis, Concurrency and Computation: Practice and Experience, Volume 20, Issue 18, (2008).

  5. Bogden, P. S., T. Gale, G. Allen, J. MacLaren, G. Almes, G. Creager, J. Bintz, L. D. Wright, H. Graber, N. Williams, S. Graves, H. Conover, K. Galluppi, R. Luettich, W. Perrie, B. Toulany, Y. P. Sheng, J. R. Davis, H. Wang, D. Forrest, Architecture of a community infrastructure for predicting and analyzing coastal inundation, Marine Technology Society Journal, 41, No 1: 53-71, 2007. [Download]
  6. Chongjie Zhang, Chirag Dekate, Gabrielle Allen, Ian Kelley and Jon MacLaren, An Application Portal for Collaborative Coastal Modeling, Concurrency and Computation: Practice and Experience, Volume 19, Issue 12, p. 1571-1581, 2007. [Download|Link]
  7. Chongjie Zhang, Ian Kelley and Gabrielle Allen, Grid Portal Solutions: A Comparison of GridPortlets and OGCE, Concurrency and Computation: Practice and Experience, Volume 19, Issue 12, p. 1739-1748, 2007. [Download|Link] (CCT Bibtex: CS_Zhang05a)

  8. Andrei Hutanu, Gabrielle Allen, Stephen D. Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Ed Seidel, Brygg Ullmer, Shalini Venkataraman, Distributed and collaborative visualization of large data sets using high-speed networks, Future Generation Computer Systems, Volume 22, Issue 8, p 1004-1010, 2006. [Link|Download]
    (CCT Bibtex: CS_Hutanu06a)
  9. Rion Dooley, Kent Milfield, C. Guiang, S. Parmidighantum, Gabrielle Allen, From Proposal to Production: Lessons Learned Developing the Computational Chemistry Grid Cyberinfrastructure, Journal of Grid Computing, Jan 2006, Pages 1 - 14, 2006. [Download|Link]
    (CCT Bibtex: CS_Dooley05a)

  10. Gabrielle Allen, Kelly Davis, T. Goodale, A. Hutanu, H. Kaiser, T. Kielmann, A. Merzky, R. Van Nieuwpoort, A. Reinefeld, F. Schintke, T. Schuett, E. Seidel and B. Ullmer, The Grid Application Toolkit: Towards Generic and Easy Application Programming Interfaces for the Grid, Proceedings of the IEEE, 93(3), pp 534-550, (2005). [Link]
    (CCT Bibtex: CS_Allen05a)
  11. Ruxandra Bondarescu, Gabrielle Allen, Greg Daues, Ian Kelley, Michael Russell, Ed Seidel, John Shalf and Malcolm Tobias, The Astrophysics Simulation Collaboratory Portal: a Framework for Effective Distributed Research, Future Generation Computer Systems, Volume 21, Issue 2, Pages 259-270, (2005). [Link|Download]
    (CCT Bibtex: CS_Bondarescu03a)

  12. Miguel Alcubierre, Gabrielle Allen, Carlos Bona, David Fiske, Tom Goodale, F.S. Guzman, Ian Hawke, Scott Hawley, Sascha Husa, Michael Koppitz, C. Lechner, Denis Pollney, David Rideout, M. Salgado, Erik Schnetter, Ed Seidel, H. Shinkai, D. Shoemaker, B. Szilagyi, Ryoji Takahashi, Jeff Winicour, Towards standard testbeds for numerical relativity, Class. Quantum Grav., 21(2), p. 589-613, (2004). [Link]

  13. Gabrielle Allen, Kelly Davis, N. Dolkas, N. D. Doulamis, Tom Goodale, Thilo Kielmann, Andre Merzky, Jarek Nabrzyski, J. Pukacki, and Thomas Radke, Enabling applications on the grid: A Gridlab overview, International Journal of High Performance Computing Applications, Volume 17, Number 4, Pages 449-466, (2003). [Link|Download]
    (CCT Bibtex: CS_Allen03c)

  14. Ed Seidel, Gabrielle Allen, Andre Merzky and Jarek Nabrzyski, GridLab - A Grid Application Toolkit and Testbed, Future Generation Computer Systems, Volume 18, Issue 8, Pages, 1143-1153, (2002). [Link]
    (CCT Bibtex: CS_Seidel02a)
  15. Michael Russell, Gabrielle Allen, Ian Foster, Ed Seidel, Jason Novotny, John Shalf, Gregor Laszewski and Greg Daues, The Astrophysics Simulation Collaboratory: A Science Portal Enabling Community Software Development, Journal on Cluster Computing, Volume 5, Issue 3, Pages 297-304, (2002). [Link].
    (CCT Bibtex: CS_Russell02a)
  16. Gregor von Laszewski, Michael Russell, Ian Foster, John Shalf, Gabrielle Allen, G. Daues, J. Novotny and E. Seidel, Community Software Development with the Astrophysics Simulation Collaboratory, Concurrency and Computation: Practice and Experience, Volume 14, Issue 13-15, Pages 1289-1301, (2002). [Link]
    (CCT Bibtex: CS_Laszewski01a)

  17. Gabrielle Allen, Dave Angulo, Ian Foster, Gerd Lanfermann, C. Liu, Thomas Radke, Ed Seidel and John Shalf, The Cactus Worm: Experiments with Dynamic Resource Discovery and Allocation in a Grid Environment, International Journal of High Performance Computing Applications, 15(4), (2001). [Link]
    (CCT Bibtex: CS_Allen01a)
  18. Gabrielle Allen, Werner Benger, Tom Goodale, C. Hege, Gerd Lanfermann, Andre Merzky, Thomas Radke, Ed Seidel and John Shalf, Cactus Tools for Grid Applications, Cluster Computing, Volume 4, Issue 3, Pages 179-188, (2001). [Link]
    (CCT Bibtex: CS_Allen01b).

  19. Miguel Alcubierre, Gabrielle Allen, Bernd Bruegmann, Gerd Lanfermann, Ed Seidel, W.M. Suen, M. Tobias, Gravitational Collapse of Gravitational Waves in 3D Numerical Relativity, Physical Review D, 61, 041501, (2000). [Link]
  20. Miguel Alcubierre, Gabrielle Allen, Bernd. Bruegmann, Ed Seidel and Wai-Mo Suen, Towards an understanding of the stability properties of the 3+1 evolution equations in general relativity, Physical Review D, 62, 124011, (2000). [Link]

  21. Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Thomas Radke, Ed Seidel, Werner Benger, H. Hege, Andre Merzky, Joan Masso and John Shalf, Solving Einstein's Equations on Supercomputers, IEEE Computer, 32, (1999). [Link] [Cover story]
    (CCT Bibtex: CS_Allen99b)
  22. Gabrielle Allen, N. Andersson, K.D. Kokkotas, P. Laguna, J. Pullin and J. Ruoff, The close-limit approximation to neutron star collisions. Physical Review D, 60, 104021, (1999).

  23. Gabrielle Allen, Nils Andersson, K.D. Kokkotas, B.F. Schutz, Gravitational Waves from Pulsating Stars: Evolving the Perturbation Equations for a Relativistic Star, Phys. Rev. D, 58, 124012 (1998).
  24. Gabrielle Allen, K. Camarda, and E. Seidel, Evolution of Distorted Black Holes: A Perturbative Approach, Physical Review D, (gr-qc/9806014), (submitted, 1998).
  25. Gabrielle Allen, Karen Camarda, and Ed Seidel, Black Hole Spectroscopy: Determining Waveforms from 3D Excited Black Holes, Physical Review D, (gr-qc/9806036), (submitted, 1998).

Referred Conference Proceedings

  1. Jian Tao, Gabrielle Allen, Peter Diener, Frank Loeffler, Roland Haas, Ian Hinder, Erik Schnetter, Yosef Zlochower, Towards a Highly Efficient and Scalable Infrastructure for Numerical Relativity Codes, to appear, Proceedings of TeraGrid 2009.
  2. Claes Eskilsson, Yaakoub El-Khamra, David Rideout, Gabrielle Allen, Q. Jim Chen, Mayank Tyagi, A Parallel High-Order Discontinuous Galerkin Shallow Water Model, to appear, Proceedings of the International Conference of Computational Science 2009 (ICCS2009).

  3. D. Katz, G. Allen, R. Cortez, C. Cruz-Neira, L. Guice, S. Jha, R. Kolluru, T. Kosar, L. Leger, C. McMahon, J. Nabrzyski, E. Seidel, G. Speyrer, M. Stubblefield, B. Voss, S. Whittenburg. Louisiana: A Model for Advancing Regional e-Science through Cyberinfrastructure. To appear in UK e-Science All Hands Meeting, Edinburgh, UK, September 2008.
  4. Ott, C. D., Schnetter, E., Allen, G., Seidel, E., Tao, J., and Zink, B. 2008. A case study for petascale applications in astrophysics: simulating gamma-ray bursts. In Proceedings of the 15th ACM Mardi Gras Conference: From Lightweight Mash-Ups To Lambda Grids: Understanding the Spectrum of Distributed Computing Requirements, Applications, Tools, infrastructures, interoperability, and the incremental Adoption of Key Capabilities (Baton Rouge, Louisiana, January 29 - February 03, 2008). MG '08. ACM, New York, NY, 1-9. DOI= http://doi.acm.org/10.1145/1341811.1341831
  5. Yun, Z., Chang, S. J., Lei, Z., Allen, G., and Bommathanahalli, A. 2008. Grid-enabled sawing optimization: from scanning images to cutting solution. In Proceedings of the 15th ACM Mardi Gras Conference: From Lightweight Mash-Ups To Lambda Grids: Understanding the Spectrum of Distributed Computing Requirements, Applications, Tools, infrastructures, interoperability, and the incremental Adoption of Key Capabilities (Baton Rouge, Louisiana, January 29 - February 03, 2008). MG '08. ACM, New York, NY, 1-8. DOI= http://doi.acm.org/10.1145/1341811.1341829

  6. Promita Chakraborty, Gabrielle Allen, Zhou Lei, John Lewis, Adam Lewis, Ian Chang-Yen, Itthichok Jangjaimon, Nian-Feng Tzeng, An Integrated Grid Portal for Managing Energy Resources, Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, Bangalore, India, December 10th to 13th, 2007. [Download]
  7. Xin Li, Zhou Li, Christopher White, Gabrielle Allen, Guan Qin, Frank T-C. Tsai, Grid-Enabled Ensemble Subsurface Modeling, Proceedings of The 19th IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2007), November 19–21, 2007, Cambridge, Massachusetts, USA. [Download]
  8. Gabrielle Allen, Building a Dynamic Data Driven Application System for Hurricane Forecasting, Proceedings of ICCS 2007, Y. Shi et al. (Eds.): ICCS 2007, Part I, LNCS 4487, pp. 1034-1041, 2007. [Download]
  9. Gabrielle Allen, Promita Chakraborty, Dayong Huang, Zhou Lei, John Lewis, Christopher White, Xiaoxi Xu, Chongjie Zhang, A Workflow Approach to Designed Reservoir Study,In Proceedings of the 2nd Workshop on Workflows in Support of Large-Scale Science (Monterey, California, USA, June 25 - 25, 2007). WORKS '07. ACM Press, New York, NY, 75-79. DOI= http://doi.acm.org/10.1145/1273360.1273374, (2007). [Link]
  10. Zhifeng Yun, Samuel J. Keasler, Maoyuan Xie, Zhou Lei, Bin Chen and Gabrielle Allen. {\em An Innovative Simulation Approach for Water Mediated Attraction Based on Grid Computing}. Proceedings of International Multi-Symposiums on Computer and Computational Sciences 2007 (IMSCCS|07), Iowa City, Iowa, USA, August 13-15. [Download]
  11. Maoyuan Xie, Fuguo Zhou, Zhifeng Yun, Gabrielle Allen, Tevfik Kosar, and Zhou Lei. {\em Collaborating Mechanical Design Phases Across A Grid}. Proceedings of International Multi-Symposiums on Computer and Computational Sciences 2007 (IMSCCS|07), Iowa City, Iowa, USA, August 13-15. [Download]
  12. Ashwin Bommathanahalli, Maoyuan Xie, Zhifeng Yun, Sun Joseph Chang, Zhou Lei, Gabrielle Allen, TOPSAW Sawing Optimization Analysis Using Grid Computing, Proceedings of International Multi-Symposiums on Computer and Computational Sciences 2007 (IMSCCS|07), Iowa City, Iowa, USA, August 13-15, (2007). [Download]
  13. Maoyuan Xie, Zhifeng Yun, Zhou Lei, Gabrielle Allen, Cluster Abstraction: towards Uniform Resource Description and Access in Multicluster Grid, Proceedings of International Multi-Symposiums on Computer and Computational Sciences 2007 (IMSCCS|07), Iowa City, Iowa, USA, August 13-15, 2007. [Download]
  14. Dylan Stark and Gabrielle Allen, Annotating High Performance Computing Simulations with Semantic Metadata, In Proceedings of Cyberspace Research Workshop, Shreveport, LA, November 2007. [Download]
  15. Dylan Stark, Gabrielle Allen, Tom Goodale, Erik Schnetter, Thomas Radke, An Extensible Timing Infrastructure for Adaptive Large-scale Applications, to appear in the Proceedings of The First Workshop on Performance Evaluation of Parallel Applications on Large-Scale Systems (PEPA'07), 2007.

  16. Zhou Lei, Gabrielle Allen, Huang, D., Kaiser, H., Li, X., and White, C. 2006. Poster reception---Utilizing grid computing technologies for advanced reservoir studies. In Proceedings of the 2006 ACM/IEEE Conference on Supercomputing (Tampa, Florida, November 11 - 17, 2006). SC '06. ACM Press, New York, NY, 151. [Link]
  17. Philip Bogden, Gabrielle Allen, Gerry Creager, Sara Graves, Rick Luettich, and Lavanya Ramakrishnan, 2006. Poster reception---Designing a collaborative cyberinfrastructure for event-driven coastal modeling. In Proceedings of the 2006 ACM/IEEE Conference on Supercomputing (Tampa, Florida, November 11 - 17, 2006). SC '06. ACM Press, New York, NY, 185. [Link]
  18. Andrei Hutanu, Stephan Hirmer, Gabrielle Allen, Andre Merzky, Analysis of Remote Execution Models for Grid Middleware, MGC'06: Proceedings of 4th International Workshop on Middleware for Grid Computing, ACM Press, pp. 62-67, 2006. [Link]
  19. Hartmut Kaiser, Andre Merzky, Stephan Hirmer, Gabrielle Allen, Edward Seidel and Ole Weidner, Poster reception---The SAGA C++ reference implementation: a milestone toward new high-level grid applications, in SC '06: Proceedings of the 2006 ACM/IEEE conference on Supercomputing, p. 184, ACM Press, New York, 2006. [Link]
  20. Stephan Hirmer, Hartmut Kaiser, Andre Merzky, Andrei Hutanu, Gabrielle Allen, Generic Support for Bulk Operations in Grid Applications, MGC'06 Proceedings of 4th International Workshop on Middleware for Grid Computing, ACM Press, pp. 50-55, 2006. [Link]
  21. Hartmut Kaiser, Andre Merzky, Stephan Hirmer, Gabrielle Allen, The SAGA C++ Reference Implementation, Proceedings of the Workshop on Library-Centric Software Design LCSD'06, Technical Report in Computer Science and Engineering at Chalmers University of Technology and G¨oeteborg University, No. 06-18, 2006. [Link].
  22. Werner Benger, Shalini Venkataraman, Amanda Long, Gabrielle Allen, Stephen David Beck, Maciej Brodowicz, Jon MacLaren, and Ed Seidel. Visualizing Katrina - Merging Computer Simulations with Observations. Lecture Notes in Computer Science, Proceedings of PARA'06: Workshop on the State-of-the-Art in Scientific Computing (In press), 2007. [Download]
  23. Zhou Lei, Dayong Huang, Archit Kulshrestha, Santiago Pena, Gabrielle Allen, Xin Li, Christopher White, Richard Duff, John R. Smith, Subhash Kalla, ResGrid: A Grid-aware Toolkit For Reservoir Uncertainty Analysis, in proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid06), May 16-19, 2006, Singapore, Pages 249-252, 2006. [Link|Download]
    (CCT Bibtex: CS_Lei06a)
  24. Zhou Lei, Dayong Huang, Archit Kulshrestha, Santiago Pena, Gabrielle Allen, Xin Li, Richard Duff, Subhash Kalla, Chris D. White, John R. Smith, Leveraging Grid Technologies For Reservoir Uncertainty Analysis, in the proceeding of High Performance Computing Symposium (HPC 2006), April 3- 6, 2006, Huntsville, AL, 2006. [Download]
    (CCT Bibtex: CS_Lei06b)
  25. Dayong Huang, Gabrielle Allen, Chirag Dekate, Hartmut Kaiser, Zhou Lei and Jon MacLaren, getdata: A Grid Enabled Data Client for Coastal Modeling, in the proceeding of High Performance Computing Symposium (HPC 2006), April 3- 6, 2006, Huntsville, AL, 2006. [Download]
    (CCT Bibtex: CS_Huang06a)

  26. Jon MacLaren, Gabrielle Allen, Chirag Dekate, Dayong Huang, Andrei Hutanu and Chongjie Zhang, Shelter from the Storm: Building a Safe Archive in a Hostile World, Lecture Notes in Computer Science Volume 3752, On the Move to Meaningful Internet Systems 2005, Ed: R. Meersman, Z. Tari, P. Herrero, p. 294, 2005. [Link|Download]
    (CCT Bibtex: CS_MacLaren05a)
  27. Chongjie Zhang, Chirag Dekate, Gabrielle Allen, Ian Kelley and Jon MacLaren, An Application Portal for Collaborative Coastal Modeling, Proceedings of GCE 2005 (Workshop on Grid Computing Portals), Supercomputing 2005. (Best paper award). [Download]
    (CCT Bibtex: CS_Zhang05b)
  28. Chongjie Zhang, Ian Kelley and Gabrielle Allen, Grid Portal Solutions: A Comparison of GridPortlets and OGCE, Proceedings of GCE 2005 (Workshop on Grid Computing Portals), Supercomputing 2005. [Download]
    (CCT Bibtex: CS_Zhang05a)
  29. J. Denemark, A. Kulshrestha and G. Allen, Deploying Legacy Applications on Grids, Proceedings of the 13th Annual Mardi Gras Conference, Frontiers of Grid Applications and Technologies, 3-5 February 2005, Baton Rouge, pp 29-34, (2005). [Link|Download]
    (CCT Bibtex: CS_Denemark05a)
  30. Z. Lei, S. Lui, R. Dooley and G. Allen, Enabling GRAM Applications Using GAT: A GAT Resource Broker Adaptor, Proceedings of the 13th Annual Mardi Gras Conference, Frontiers of Grid Applications and Technologies, 3-5 February 2005, Baton Rouge, pp 66-71, (2005). [Link|Download]
    (CCT Bibtex: CS_Lei05a)
  31. Stephan Hirmer, Hartmut Kaiser, Andre Merzky, Andrei Hutanu and Gabrielle Allen, Seamless Integration of Generic Bulk Operations in Grid Applications, (poster), GADA '06: Proceedings of the 2006 International Symposium on Grid computing, high-performance and Distributed Applications, August 2006, pp. 52-54, 2006.
    (CCT Bibtex: CS_Hirmer_06a)
  32. Santiago Pena, Dayong Huang, Xin Li, Zhou Lei, Gabrielle Allen, Chris White, A Generic Task-Farming Framework for Reservoir Analysis in a Grid Environment, In Proceedings of the 2006 international Conference Workshops on Parallel Processing (August 14 - 18, 2006). ICPPW. IEEE Computer Society, Washington, DC, p. 426-434, 2006. [Link, Download]
    (CCT Bibtex: CS_Pena06a)
  33. Gabrielle Allen, Dave Angulo, Tom Goodale, Thilo Kielmann, Andre Merzky, J. Nabrzysky, J. Pukacki, M. Russell, T. Radke, E. Seidel, J. Shalf and I. Taylor, GridLab: Enabling Applications on the Grid, In Lecture Notes in Computer Science, Grid Computing - GRID 2002 : Third International Workshop, Baltimore, MD, USA, November 18, 2002. Proceedings, Springer Verlag, Pages 39-45, (2003). [Link|Download].
    (CCT Bibtex: CS_Allen_03d)
  34. Gerd Lanfermann, Gabrielle Allen, Thomas Radke and Ed. Seidel, Nomadic Migration: Fault Tolerance in a Disruptive Grid Environment, in Proceedings of the Second IEEE/ACM International Symposium on Cluster Computing and the Grid, Pages 280-281, 2002.
    (CCTBibtex: CS_Lanfer02a)
  35. Thomas Dramlitsch, Gabrielle Allen and Ed Seidel, Efficient Techniques for Distributed Computing, Proceedings of Tenth IEEE International Symposium on High Performance Distributed Computing, HPDC-10, San Francisco, IEEE Press, Pages 435-436, 2001.
    (CCT Bibtex: CS_Dramlitsch01a)
  36. Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Ed Seidel, Thilo Kielmann, K. Verstoep, Z. Balaton, P. Kacsuk, F. Szalai, J. Gehring, A. Keller, A. Streit, L. Matyska, M. Ruda, A. Krenek, B. Ludwiczak, Jarek Nabrzyski, J. Pukacki, H. Frese, H. Knipp, Andre Merzky, A. Reinefeld, F. Schinkte, H. Kersken, G. Aloisio, M. Cafaro, W. Ziegler and Michael Russell, Early Experiences with the Egrid Testbed, IEEE International Symposium on Cluster Computing and the Grid, Brisbane, Australia, May 16-18, pages 130-137, (2001). [Link].
    (CCT Bibtex: CS_Allen00c)
  37. Gabrielle Allen, Kelly Davis, Thomas Dramlitsch, Tom Goodale, Ian Kelley, Gerd Lanfermann, Jason Novotny, Thomas Radke, Kashif Rasul, Michael Russell, Ed Seidel and Oliver Wehrens,
    The GridLab Grid Application Toolkit, Proceedings of 11th IEEE International Symposium on High Performance Distributed Computing HPDC-11 2002 (HPDC'02), (2002).
    (CCT Bibtex: CS_Allen02e)
  38. Tom Goodale, Gabrielle Allen, Gerd Lanfermann, Joan Masso, Tradke Radke, Ed Seidel and John Shalf, The Cactus Framework and Toolkit: Design and Applications, Vector and Parallel Processing --- VECPAR'2002, 5th International Conference, Springer, (2003). [Link|Download]
    (CCT Bibtex: CS_Goodale02a)
  39. Gabrielle Dawn Allen, Nils Andersson, Kostas Kokkotas and Bernard. F. Schutz, Evolutions of Stellar Oscillations, in Proceedings of the 8th Marcel Grossmann Meeting on General Relativity, Ed: T. Piran, World Scientific, Singapore, p.732-734, (1999).
  40. Gabrielle Allen, Tom Goodale, Joan Masso and Ed Seidel, The Cactus Computational Toolkit and Using Distributed Computing to Collide Neutron Stars, Proceedings of the 8th IEEE International Symposium on High Performance Distributed Computing (HPDC8), Redondo Beach August 3-6 1999, IEEE Computer Society, (1999). [Link|Download]
    (CCT Bibtex: CS_Allen99c)
  41. Gabrielle Allen, Tom Goodale and Ed Seidel, The Cactus Computational Collaboratory: Enabling Technologies for Relativistic Astrophysics, and a Toolkit for Solving PDEs by Communities in Science and Engineering, Proceedings of 7th Symposium on the Frontiers of Massively Parallel Computation (Frontiers99), IEEE, New York (1999). [Link|Download]
    (CCT Bibtex: CS_Allen99a)
  42. Gabrielle Allen, Thomas Dramlitsch, Ian Foster, N. Karonis, Matei Ripeanu, Ed Seidel and Brian Toonen, Supporting efficient execution in heterogeneous distributed computing environments with Cactus and Globus, Proceedings of Supercomputing 2001, Denver, USA, (2001). [Link]
    (CCT Bibtex: CS_Allen01d)
  43. Michael Russell, Gabrielle Allen, Greg Daues, Ian Foster, Tom Goodale, Ed Seidel, Jason Novotny, John Shalf, W.M. Suen and Gregor Von Laszewski, The Astrophysics Simulation Collaboratory: A Science Portal Enabling Community Software Development, In: High Performance Distributed Computing, 2001, Proceedings of Tenth IEEE International Symposium on High Performance Distributed Computing, HPDC-10, San Francisco, Pages 207-215, (2001). [Link]
    (CCT Bibtex: CS_Russell01a)
  44. Gabrielle Allen, W. Benger, Thomas Dramlitsch, Tom Goodale, H. Hege, Gerd Lanfermann, Andre Merzky, Thomas Radke and Ed Seidel, Cactus Grid Computing: Review of Current Development, Lecture Notes In Computer Science; Vol. 2150, Euro-Par 2001: Parallel Processing, Proceedings of 7th International Euro-Par Conference Manchester, UK August 28-31, 2001, R. Sakellariou, J. Keane, J. Gurd, L. Freeman (Eds.), Springer-Verlag, (2001). [Link]
    (CCT Bibtex: CS_Russell01a)
  45. Gabrielle Allen, Werner Benger, Tom Goodale, H. Hege, G. Lanfermann, Andre Merzky, Thomas Radke, Ed Seidel and John Shalf, The Cactus Code: A Problem Solving Environment for the Grid, Proceedings of the 9th IEEE International Symposium on High Performance Distributed Computing (HPDC9), August 1-4 2000, Pittsburgh, pp 253-260, IEEE Computer Society, (2000). [Link|Download]
    (CCT Bibtex: CS_Allen00a)
  46. L.A. Wild, M. Alcubierre, G. Allen and B. Schutz, Interface Behaviour in an Adaptive Mesh in Proceedings of the 7th Marcel Grossmann Meeting on General Relativity, Stanford 24-30 July 1994, Ed: R. Jantzen, World Scientific, Singapore, p.651-653, (1996).
  47. Gabrielle Allen, Miguel Alcubierre, Simon Farrar, Bernard F. Schutz and Lee A. Wild, Modeling Moving Black Holes, Proceedings of the 7th Marcel Grossmann Meeting on General Relativity, Stanford 24-30 July 1994, Ed: R. Jantzen, World Scientific, Singapore, p.615-618, (1996).
  48. G.D. Allen, Numerical Relativists Illuminate Black Hole Collisions, Physics World, 7(1), (1994).
  49. G.D. Allen and B.F. Schutz, An ADI Scheme for a Black Hole Problem, In Approaches to Numerical Relativity, Ed: R. d'Inverno, Cambridge University Press, Cambridge, (1992). G. Allen, Finite Differencing Near 3-D Black Holes, The Proceedings of the Computational Relativity Black Hole Conference, October 7-9 1992, Syracuse, (1992).
  50. G.D. Allen, Implicit Schemes for Wave Propagation, The Proceedings of the Texas Symposium on 3D Numerical Relativity, Ed: R. Matzner, (1990).

Other Articles

  1. Allen, G., Bogden, P., Kosar, T., Kulshrestha, A., Namala, G., Tummala, S., Seidel, E. "Cyberinfrastructure for Coastal Hazard Prediction," CTWatch Quarterly, Volume 4, Number 1, March 2008. [Link]
  2. Chokchai Box Leangsuksun, Leslie Guice, Chris Womack, Stacey Simmons, Ravi Paruchuri, Andrei Hutanu, Gabrielle Allen, Ed Seidel, Thomas Sterling, Petr Holub, The Next Generation Distributed Learning Environment: The Experiences, Proceedings of e-Learning International Conference 2006: "Learning Theories vs Technologies?", 14-16 December 2006, Bangkok, Thailand. [Download]
  3. Gabrielle Allen, Philip Bogden , Richard A. Luettich, Jr., Edward Seidel, and Robert Twilley, Designing a Dynamic Data Driven Application System for Coastal and Environmental Modeling, Proceedings of WoCo9, 2006, P. Gaffney (ed.), IFIP series, Springer-Verlag, Berlin. [Download]
  4. Daniel S. Katz, Joseph C. Jacob, Peggy P. Li, Yi Chao and Gabrielle Allen, Data-Oriented Distributed Computing for Science: Reality and Possibilities, In On the Move to Meaningful Internet Systems 2006: CoopIS, DOA, GADA, and ODBASE, Lecture Notes in Computer Science, Springer, 2006. [Link]
  5. Philip Bogden, Gabrielle Allen, Greg Stone, Jon MacLaren, Gerald Creager, Larry Flournoy, Wei Zhao, Hans Graber, Sara Graves, Helen Conover, Rick Luettich, Will Perrie, Lavanya Ramakrishnan, Dan Reed, Peter Sheng, Harry Wang, The SURA Coastal Ocean Observing and Prediction Program (SCOOP) Service-Oriented Architecture, Proceedings of IEEE/MTS Oceans 2006, Boston, MA, September 18-21, 2006. [Download]
    (CCT Bibtex: CS_Bogden06a)
  6. Craig Douglas, Gabrielle Allen, Yalchin Efendiev and Guan Qin, High Performance Computing Issues for Grid Based Dynamic Data-Driven Applications, Proceedings of DCABES 2006, W. Xu and G. Wang (eds.), Shanghai University Press, Shanghai, 2006, pp. 175-178. [Download]
    (CCT Bibtex: CS_Douglas06a)
  7. Gabrielle Allen and Edward Seidel, Application Frameworks for High Performance and Grid Computing, Scientific Computing, 2006 [Cover Story] [Link|Download].
    (CCT Bibtex: CS_Allen06b)

  8. Philip Bogden, Wei Zhao Sara Graves Hans Graber Harry Wang Rick Luettich, Gabrielle Allen, Greg Stone, Peter Sheng, The SURA Coastal Ocean Observing and Prediction Program (SCOOP): Integrating Marine Science and Information Technology, Proceedings of IEEE/MTS Oceans 2005, Washington DC, September 18-23, 2005. [Download]
    (CCT Bibtex: CS_Bogden05a)

  9. Gabrielle Allen, Tom Goodale, Hartmut Kaiser, Thilo Kielmann, Archit Kulshrestha, Andre Merzky and R. V. van Nieuwpoort, A Day in the Life of a Grid-Enabled Application: Counting on the Grid. Proceedings of the Workshop on Grid Application Programming Interfaces, GGF12, Brussels, September 20th 2004, (2004). [Link]
    (CCT Bibtex: CS_Allen04a)
  10. Gabrielle Allen, Ed Seidel, John Shalf, Scientific Computing on the Grid, Byte, Spring, (2002). [Link].
    (CCT Bibtex: CS_Allen02a)

  11. G. Allen, T. Goodale, G. Lanfermann, T. Radke, E. Seidel, The Cactus Code for the Grid, Proceedings of 1st EGrid Meeting, Poznan, (2000). [Download]
    (CCT Bibtex: CS_Allen00b)
  12. G. Allen, T. Dramlitsch, I. Foster, T. Goodale, N. Karonis, M. Ripeanu, E. Seidel, and B. Toonen, Cactus-G: Enabling High-Performance Simulation in Heterogeneous Distributed Computing Environments, Proceedings of Fourth Globus Retreat, July 30-August 1 2000, Pittsburgh, (2000). [Download]
    (CCT Bibtex: CS_Allen00d)

Documentation, Technical Reports and Proposals

  1. Gabrielle Allen and Erik Schnetter, The Cactus Framework: Software Sustainability Position Paper, CCT Technical Report Series, CCT-TR-2009-5, (2009). [Link]
  2. Gabrielle Allen, Charles McMahon, Edward Seidel, Tom Tierney, The 2003 Louisiana Optical Network Initiative (LONI) Concept Paper, CCT Technical Report Series, CCT-TR-2009-3. [Link]
  3. Andrei Hutanu, Jinghua Ge, Cornelius Toole, Ravi Paruchuri, Adam Yates, Gabrielle Allen, The LONI, Internet2 DCN, and CESNET Teams, Distributed Visualization Using Optical Networks: Demonstration at Supercomputing 2008, CCT Technical Report Series, CCT-TR-2008-10. [Link]
  4. Q.J. Chen, C. Eksilsson, M. Tyagi, and G. Allen, Coastal & Ocean Modeling Infrastructure (COMI): Development of an Integrated Modeling Framework for Simulations of Coastal Processes in Deltaic Environments Using High-Performance Computing, CCT Technical Report Series, CCT-TR-2008-8. [Link]
  5. Daniel S. Katz, Gabrielle Allen, Ricardo Cortez, Carolina Cruz-Neira, Raju Gottumukkala, Zeno D. Greenwood, Les Guice, Shantenu Jha, Ramesh Kolluru, Tevfik Kosar, Lonnie Leger, Honggao Liu, Charlie McMahon, Jarek Nabrzyski, Bety Rodriguez-Milla, Ed Seidel, Greg Speyrer, Michael Stubblefield, Brian Voss, Scott Whittenburg, Louisiana: A Model for Advancing Regional e-Science through Cyberinfrastructure, CCT Technical Report Series, CCT-TR-2008-7. [Link]
  6. Gabrielle Allen et al (CIGR Collaboration), Community Infrastructure for General Relativistic MHD, CCT Technical Report Series, CCT-TR-2008-6. [Link]
  7. Jian Tao, Gabrielle Allen, Ian Hinder, Erik Schnetter, Yosef Zlochower, XIREL: Standard Benchmarks for Numerical Relativity Codes, CCT Technical Report Series, CCT-TR-2008-5. [Link]
  8. HPC Application Software Consortium Summit Concept Paper, Prepared for HPC Application Software Consortium Summit, March 25th-26th, 2008, National Center for Supercomputing Applications.
  9. Alpaca: Cactus Tools for Application Level Performance and Correctness Analysis, Erik Schnetter, Gabrielle Allen, Tom Goodale, Tyagi Mayank. CCT Technical Report Series, CCT-TR-2008-2. [Link]
  10. Gabrielle Allen, Stephen D. Beck, Susanne Brenner, Daniel S. Katz, J. Ramanujam, Thomas Sterling, Computational Science — Advancing Research, Society and the Economy, proposal to LSU Flagship Cluster Hiring Proposal, 2006. [Download, Review]
  11. Craig Lee, S. Matsuoka, D. Talia, Alan Sussman, M. Mueller, Gabrielle Allen, J. Saltz, A Grid Programming Primer, Advanced Programming Models Research Group, Global Grid Forum, (2001). [Download]
    (CCT Bibtex: CS_Lee01a)
  12. Gabrielle Allen, Jarek Nabryski, Ed Seidel, Expression of Intent for a European Distributed Supercomputer Network, (2002). [Download]
    (CCT Bibtex: CS_Allen02e)
  13. Gabrielle Allen, Charles MacMahon, Ed Seidel, Tom Tierney, LONI Concept Paper, (2003). [Download]
    (CCT Bibtex: CS_Allen03e)
  14. John Shalf, Erik Schnetter, Gabrielle Allen, Ed Seidel, Common Computational Frameworks as Benchmarking Platforms, Report for NSF Benchmarking Committee, (2005). [Download]
    (CCT Bibtex: CS_Shalf05)
  15. Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Thomas Radke, David Rideout, Jonathan Thornburg, Cactus Users Guide, (2005). [Link|Download]
    (CCT Bibtex: CS_cactususersguide)
  16. Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Thomas Radke, David Rideout, Jonathan Thornburg, Cactus Reference Manual , (2005). [Link|Download]
  17. Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Thomas Radke, David Rideout, Jonathan Thornburg, Cactus Thorn Guide, (2005). [Link|Download]
  18. Ed Seidel, Gabrielle Allen, Stephen Beck, Rudy Hirschheim, Jorge Pullin, Joel Tohline, Joel Williams, CCT Faculty Plan 2006, (2006). [Link|Download]
    (CCT Bibtex: CS_FacultyPlan06)

Posters

  1. Lei Jiang, Qi Fan, Gabrielle Allen, Q. Jim Chen, Towards an Integrated Problem-Solving Environment for Hybrid Numerical Models with Statistical Learning Components, TeraGrid 2009. [Download]
  2. Soon-Heum Ko, Prasad Kalghatgi, Sumanta Acharya, Gabrielle Allen, Shantenu Jha, Erik Schnetter, Mayank Tyagi, Use of the Cactus Framework for Multi-block CFD Applications, Poster Session, International Conference of Computational Science 2009 (ICCS2009), Baton Rouge, May 2009. [Abstract|Download]
  3. J. Tao, E. Schnetter, G. Allen, A. Hutanu, E. Bentivegna, J. Ge, P. Diener, C. Toole, R. Paruchuri, W. Benger, K. Liu, R. Kooima, O. Korobkin, A. Yates, Automatic Code Generation and Distributed Visualization for Solving Large Scale Scientific Problems, Poster Session, International Conference of Computational Science 2009 (ICCS2009), Baton Rouge, May 2009. [Abstract|Download]
  4. Lei Jiang, Gabrielle Allen, Qin Chen, Towards an Integrated Problem-Solving Environment for Hydrid Numerical Models with Statistical Learning Components, TeraGrid 2009.
  5. Harsha Bhagawaty, Lei Jiang, Kelin Hu, Gabrielle Allen, Nathan Brener, Q. Jim Chen, S. Sitharama Iyengar, Erik Schnetter, A Simulated Hurricane Database for New Modes of Analysis and Prediction, Poster Session, International Conference of Computational Science 2009 (ICCS2009), Baton Rouge, May 2009.
  6. Harsha Bhagawaty, Pradeep Chowriappa, Kelin Hu, Lei Jiang, Gabrielle Allen, Nathan Brener, Q. Jim Chen, Sumeet Dua,S.S.Iyengar,Erik Schnetter, A Simulated Hurricane Database for New Modes of Prediction and Analysis, Louisiana RII CyberTools and Science Drives Symposium, May 2009. [Download]
  7. Prasad Kalghatgi, Jerina Pillert, Bharadhwaj Thalakokkula, Sumanta Acharya, Gabrielle Allen, Peter Diener, Archit Kulshreshta, Sirish Tummala, Design And Implementation of Application Portal for CyberTools Science Drivers, Louisiana RII CyberTools and Science Drives Symposium, May 2009. [Download]
  8. Nagelberg, A., Kaiser, C., Kaiser, H., and Allen, G. 2008. Near realtime visualization of coastal modelling results with WMS and Google Maps. In Proceedings of the 15th ACM Mardi Gras Conference: From Lightweight Mash-Ups To Lambda Grids: Understanding the Spectrum of Distributed Computing Requirements, Applications, Tools, infrastructures, interoperability, and the incremental Adoption of Key Capabilities (Baton Rouge, Louisiana, January 29 - February 03, 2008). MG '08. ACM, New York, NY, 1-1. DOI=http://doi.acm.org/10.1145/1341811.1341840, [Download|Link]
  9. Stamou, K., Akunuri, P. V., Allen, G., Kulshrestha, A., and Katz, D. S. 2008. Feature rich, enhanced grid portal for LONI. In Proceedings of the 15th ACM Mardi Gras Conference: From Lightweight Mash-Ups To Lambda Grids: Understanding the Spectrum of Distributed Computing Requirements, Applications, Tools, infrastructures, interoperability, and the incremental Adoption of Key Capabilities (Baton Rouge, Louisiana, January 29 - February 03, 2008). MG '08. ACM, New York, NY, 1-1. DOI= http://doi.acm.org/10.1145/1341811.1341842. [Link|Download]
  10. Wu, Y., Tugurlan, M. C., and Allen, G. 2008. Advance reservations: a theoretical and practical comparison of GUR & HARC. In Proceedings of the 15th ACM Mardi Gras Conference: From Lightweight Mash-Ups To Lambda Grids: Understanding the Spectrum of Distributed Computing Requirements, Applications, Tools, infrastructures, interoperability, and the incremental Adoption of Key Capabilities (Baton Rouge, Louisiana, January 29 - February 03, 2008). MG '08. ACM, New York, NY, 1-1. DOI= http://doi.acm.org/10.1145/1341811.1341847. [Link|Download]
  11. Alpaca: Cactus Tools for Application Level Profiling and Correctness Analysis, Erik Schnetter, Gabrielle Allen, Tom Goodale, Mayank Tyagi, NSF Workshop "Building PetaScale Applications and Software Environments on TeraGrid" held at Arizona State University, December 11-12, 2007.
  12. XiRel: Next Generation Infrastucture for Numerical Relativity, Gabrielle Allen, Manuela Campanelli, Pablo Laguna, Carlos Lousto, Deidre Shoemaker, Erik Schnetter, Ed Seidel, NSF Workshop "Building PetaScale Applications and Software Environments on TeraGrid" held at Arizona State University, December 11-12, 2007.
  13. A Collaborative High Performance and Grid Computing Portal, Prathyusha Akunuri-Venkata, Daniel S. Katz, Gabrielle Allen, Grid 2007, Austin, September 2007.
  14. Ubiquitous Computing and Monitoring System (UCoMS) for Discovery and Management of Energy Resources, DOE EPSCOR Program Review, July 2007.
  15. A Grid-enabled Framework for Ensemble Inverse Modeling, Zhou Lei, Gabrielle Allen, Tevfik Kosar, Guan Qin, Frank Tsai, Christopher D. White, DOE EPSCOR Program Review, July 2007.
  16. Use of Online Virtual Communities in Scientific Computing, Kevin Kolz, Shalini Venkataraman, Gabrielle Allen, Poster for CSC3999, Summer 2007.
  17. Utilizing Grid Computing for Advanced Reservoir Studies, Z. Lei, G. Allen, P. Chakraborty, D. Huang, H. Kaiser, A. Kulshresha, J. Lewis, X. Li, J. Smith, C. White, Supercomputing 2006, Tampa, 2006.
  18. Building an Application Portal for Geoscience, John Lewis, Promita Chakraborty, Dr. Zhou Lei, Xin Li, Chongjie Zhang, Dr. Chris White, Dr. Gabrielle Allen, Poster at the LSU Summer Undergraduate Research Forum (SURF), 2006.
  19. Mojave: A Cactus Eclipse Plug-in, Richard Guidry, Yaakub El Khamra, Gabrielle Allen, 2006.

Web and Other Articles

  1. Grid Computing for Computational Astrophysics, Thomas Dramlitsch, Gerd Lanfermann, Thomas Radke, Gabrielle Allen, Ed Seidel, inSiDE, Vol.1, No. 1, Spring 2003. [Link]
  2. Catching a Wave With The Research Net, MPG Max Planck Research, Magazine 3, 2005. (Contributer to article) [Link]
  3. SDSC to the Data Storage Rescue, Envision Magazine, Spring 2006. [Link]